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Dataset for Raw FHIR Data

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  • This dataset will be used to store raw FHIR data
  • Total time taken for this task: 5 Minutes.
  • Pre-requisites: Create Domain
Note
  • Add your userid as a suffix to all the resources that you create.
  • This will avoid contention with other users as Amorphic maintains a global metadata catalog. 💡
  • This is mandatory as multiple users are following these workshop instructions.

Create S3 Dataset​

  • Click on Catalog --> Datasets on the left side navigation-bar.

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  • Click on Create Dataset

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  • Enter all the required details as mentioned below and click on Next

Dataset details​

"Dataset Name" : "HL_raw_<username>"
"Description" : "Dataset to store raw FHIR data"
"Domain" : "hlworkshop<username>"
"Dataset Type" : "Internal"
"Connection Type" : "api"
"File Type" : "others"
"Target Location" : "S3"
"Update Method" : "Append"
"Enable Malware Detection" : "No"
"Enable AI Services" : "No"
"Enable Data Cleanup" : "No"
"Enable Metrics Collection" : "No"
"Enable Life Cycle Policy" : "No"

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  • Review the dataset details and click on Create

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note

Look for published status next to the dataset name as shown below

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Upload Data to the Dataset​

  • Click on the Upload button on the top right corner

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  • Click on Select Files to Upload button

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  • Downlaod the sample raw fhir data files
    Encounter Sample 1
    Encounter Sample 2
  • Select the .ndjson files provided to upload to the s3 dataset created above.
  • Click on Upload Selected Files to finish the upload

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  • All the uploaded files will be present under the Files tab of the dataset

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